YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FIEF_SALCH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTYGRLVS RASIAATAMA SALLLIKIFA WWYTGSVSIL AALVDSLVDI AASLTNLLVV  60
   61 RYSLQPADDE HTFGHGKAES LAALAQSMFI SGSALFLFLT SIQNLIKPTP MNDPGVGIGV 120
  121 TVIALICTII LVTFQRWVVR KTQSQAVRAD MLHYQSDVMM NGAILIALGL SWYGWHRADA 180
  181 LFALGIGIYI LYSALRMGYE AVQSLLDRAL PDAERQEIID IVTSWPGVSG AHDLRTRQSG 240
  241 PTRFIQIHLE MEDNLPLVQA HFVADQVEQA ILQRFPGSDV IIHQDPCSVV PREGRKFELV 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	11	0.81
Transmembrane Helix	12	31	0.94
Non-Cytoplasmic	32	38	0.76
Transmembrane Helix	39	60	0.91
Cytoplasmic	61	80	0.90
Transmembrane Helix	81	102	0.91
Non-Cytoplasmic	103	115	0.85
Transmembrane Helix	116	138	0.90
Cytoplasmic	139	152	0.91
Transmembrane Helix	153	173	0.87
Non-Cytoplasmic	174	179	0.71
Transmembrane Helix	180	199	0.90
Cytoplasmic	200	300	0.96