YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAD3C_HELAN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLVLSGCA IKPFSQSLPI PTKRFITNPS NINLLHPKDP IFSPNFHGFS RWAVKVSAPL  60
   61 RIPSIDQQDL DLDLERERIS SLDVQEEEIF DAGAPPPFKL ADIRAAIPKR CWVKDPWRSM 120
  121 SYVVRDVAIV LGLAAAAAHL NNWLVWPLYW AAQGTMFWAL FVLGHDCGHG SFSNNAKLNS 180
  181 VVGHLLHSSI LVPYHGWRIS HRTHHQNHGH VENDESWHPL TEKTFKSLDW ITRTLRFTLP 240
  241 FPMLAYPFYL WNRSPGKSGS HFDPSSDLFV PAEQKDVITS TICWTTMLAL LFGLNFVVGP 300
  301 VQMLKLYGIP YLINVMWLDF VTYLHHHGHE DKLPWYRGKE WSYLRGGLTT IDRDYGWINN 360
  361 IHHDIGTHVI HHLFPQIPHY HLIEATEAAK PVLGKYYREP KKSSPIPFHL LGELVRSLKK 420
  421 DHYVSDTGDV LYYQTDDKLS KEK

Type	Start	End	Confidence
Cytoplasmic	1	121	0.98
Transmembrane Helix	122	140	0.91
Non-Cytoplasmic	141	147	0.69
Transmembrane Helix	148	168	0.76
Cytoplasmic	169	233	0.73
Transmembrane Helix	234	251	0.51
Non-Cytoplasmic	252	276	0.54
Transmembrane Helix	277	299	0.77
Cytoplasmic	300	443	0.64