YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50953715
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTLLKRPCI AVSAKPKASK AVLPFRAYVV RAPVLRGAAS AAAGAAPAAP AAVPKKADAA  60
   61 PAHWQLVAAE LVKPKREKLT VVSVAPAVRV AISEALGLAP GAVTPGQLVA GLRRLGFTKV 120
  121 FDTNLAADLT IMEEGTELLH RLADHLEGHP KQEEPMPMFT SCCPGWIQMV EKSYPELIPY 180
  181 LSSCKSPQMM MGAVIKNFFA EEAGVKPGDI ISCSVMPCVR KQGEADRPMM TTTAEGRDVD 240
  241 HVITTVELAQ MLTERGIDLT SLPDEEFDCP LGIGSGGGQL FGTTGGVMEA ALRTVVELVS 300
  301 GQPMGRIVFE DVRGLEGIKA ATITLQPAAN SPFAKYNPEG KGLDVRIAVA NGLGNAKKLI 360
  361 TEMKAGTSKY DFIEVMACPS GCIGGGGQPR SADKQILQKR QQAIYTLDER AVIRRSHENP 420
  421 IIAALYKRWL QEPCSETAHH LLHTHYVAGG PAEAQQEE

Type	Start	End	Confidence
Signal Peptide	1	51	0.92
N-region	1	42
H-region	43	48
C-region	49	51
Cleavage Site	51	52
Non-Cytoplasmic	52	458	0.99