YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM11A_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVAGYGTHN RDLKQWMVTL LSALSLMMVV VTIGLLALFL VFDIQVNSNS GQKSSNQLKD  60
   61 LQETNENLVD EIFIDSALNN RYIKNHVVGL TPEEDDTKAD IVMVFQPPAT GRRTVGKKTH 120
  121 HSILDQKTRN ARALPADVSL VQVKDCGKRA IPLIANRIVS GNPAAKGAWP WQVSLQRSNI 180
  181 HQCGGTLIGN MWVVTAAHCF RTNSNPRQWT LSFGTTINPP LMKRDVRRII MHERYRPPAR 240
  241 DHDIALVQFS PRVTFSDEVR RICLPEPSAS FPPNSTVYIT GFGALYYGGE SQNELREARV 300
  301 QIISNDICKK RHVYGNEIKR GMFCAGFLEG NYDACRGDSG GPLVIRDNKD TWYLIGIVSW 360
  361 GDNCGQKNKP GVYTQVTYYR HWIASKTGL

Type	Start	End	Confidence
Cytoplasmic	1	17	0.94
Transmembrane Helix	18	42	0.90
Non-Cytoplasmic	43	389	0.96