YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARNC_PSEPF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPYPIHCVS IVIPVYNEED SLPELLRRTE AACKQLRHDY EIVLVDDGSR DASAQLLEEA  60
   61 ASVVDSPFVA VILNRNYGQH AAIMAGFEQC KGDVVITLDA DLQNPPEEIP RLVAEAEKGF 120
  121 DVVGTVRGNR QDSALRRYPS KLINLAVQRS TGVAMSDYGC MLRAYRRTII DAMLACRERS 180
  181 TFIPILANSF ARHTTEIPVA HAEREHGDSK YSPMRLINLM FDLITCMTTT PLRLLSIVGF 240
  241 AMAGLGVLFA AALIFMRLAF GAGWAGDGLF VLFAVLFVFT GGQFIGMGLL GEYLGRMYSD 300
  301 VRARPRFFIE KVLRGHPATP APAITVDGLT SNSTSDQVLS

Type	Start	End	Confidence
Cytoplasmic	1	233	0.92
Transmembrane Helix	234	256	0.89
Non-Cytoplasmic	257	268	0.68
Transmembrane Helix	269	291	0.89
Cytoplasmic	292	340	0.84