YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56378846, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELARTPAT PPAAIRETES VSLWKEAWRR FRKNKIALVG AGIVLFFILV AILAPWLAPY  60
   61 DYKDQQLAER LQPPSSEHWF GTDDFGRDIF SRVIYGARIS LWVGFFSVLG SVMVGSLLGI 120
  121 IAGYYGRWID GVISRLFDIM LAFPSILLAI GIVAVLGPSL QNALIAIAVI NVPNFGRLIR 180
  181 SRVLSIKQEE YIMAAKAIGM SDWRILIHHI LPNSLAPIIV QGTLAIATAI IEAAALGFLG 240
  241 LGAQPPNPEW GKMLSDAKDF LTQAPWTMIF PGLAIMLTVL GFNLMGDGLR DALDPRMKN

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	58	0.92
Non-Cytoplasmic	59	101	0.96
Transmembrane Helix	102	125	0.90
Cytoplasmic	126	135	0.80
Transmembrane Helix	136	156	0.92
Non-Cytoplasmic	157	162	0.68
Transmembrane Helix	163	179	0.88
Cytoplasmic	180	217	0.76
Transmembrane Helix	218	241	0.83
Non-Cytoplasmic	242	263	0.81
Transmembrane Helix	264	286	0.87
Cytoplasmic	287	299	0.80