YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56419526, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.40
Transmembrane Helix	14	35	0.84
Cytoplasmic	36	60	0.40
Transmembrane Helix	61	84	0.75
Non-Cytoplasmic	85	88	0.44
Transmembrane Helix	89	111	0.83
Cytoplasmic	112	123	0.54
Transmembrane Helix	124	148	0.86
Non-Cytoplasmic	149	167	0.64
Transmembrane Helix	168	188	0.95
Cytoplasmic	189	208	0.61
Transmembrane Helix	209	231	0.77
Non-Cytoplasmic	232	272	0.79
Transmembrane Helix	273	292	0.86
Cytoplasmic	293	300	0.78
Transmembrane Helix	301	319	0.92
Non-Cytoplasmic	320	325	0.69
Transmembrane Helix	326	347	0.89
Cytoplasmic	348	352	0.61
Transmembrane Helix	353	372	0.77
Non-Cytoplasmic	373	376	0.77
Transmembrane Helix	377	396	0.94
Cytoplasmic	397	672	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRAFGTLQK VGKALMLPVA ILPAAGILLA LGNALKNPAL TDKIPALKAD WVVLISNVME  60
   61 QAGGIVFSNL SLLFAVGVAI GLAGGDGVAG LAAIIGYLIM NVTMSVILGV TSDMIGADPS 120
  121 YANILGIPTL QTGVFGGIIV GILAAYMYNK YFNIELPQYL GFFAGKRFVP IVTAASAVVL 180
  181 GILMTFVWPP IQHGLNAFSH NMIDANKTLA AFIFGVIERA LIPFGLHHIF YAPFWFEFGE 240
  241 YVNKAGQVVH GDQKIFFEQL KDGVKLTAGT FMTGKFPFMM FGLPAAALAI YHEARPENKK 300
  301 VVAGIMGSAA LTSFLTGITE PIEFSFLFVA PALFAIHCVF AGLSFMIMHL LNVKIGMTFS 360
  361 GGVIDFLLFG VLPNRTAWWL VIPVGLVFAV IYYFGFRFAI RKWDLATPGR EKTVEEAPKA 420
  421 EAAAAGDLPY EVLAALGGKE NIEHLDACIT RLRVSVHDIG QVDKDRLKAL GAAGVLEVGN 480
  481 NVQAIFGPKS DMLKGQIQDI MQGKAPARAE EKPKAAAPEA AKSETIASPM SGEVVPLAEV 540
  541 PDQVFSQKMM GDGFAVMPTD GTVVSPVDGK IINVFPTKHA IGIQSAGGHE MLIHVGIDTV 600
  601 KLNGQGFEAL VKEGDEVKKG QPILRVDLDY VKQNAPSIVT PVIFTNLKAG ETVHVNKQGP 660
  661 VARGEDAVVT IS