YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56421116, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHEQRFRQA KTAAIVGIAG NMALAAVKAA VGVWSQSQAL IADAAHSASD VAGSFAVWVG  60
   61 LRAAARPPDE DHPYGHGKAE SIAAIIVAVL LFLVGIEIGR SAFLSFFAPL SPPGAAAIYV 120
  121 LLLSIAVKEA MFRYKYRLGK KLNSDALIIN AYEHRSDVFS SFAALIGVGA AIVGGKWEID 180
  181 WLVYADPLAG LFVSLLVLKM AWDLGRQSVH TAIDHVLHEE EAGYLREAVL SIPDVRQINE 240
  241 LHAREHGHYV IVDLKIAVDP QLTVEEGHRI GKKVKEKLLT LPRVRNVMVH INPYNPEKKP 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	32	0.93
Non-Cytoplasmic	33	41	0.76
Transmembrane Helix	42	61	0.92
Cytoplasmic	62	80	0.83
Transmembrane Helix	81	99	0.92
Non-Cytoplasmic	100	109	0.60
Transmembrane Helix	110	132	0.82
Cytoplasmic	133	157	0.90
Transmembrane Helix	158	175	0.94
Non-Cytoplasmic	176	181	0.79
Transmembrane Helix	182	202	0.89
Cytoplasmic	203	300	0.98