YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56421416, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTLYDFHH LPHVKTQNES KKALWVTLLL TMFFTAVEII GGLISNSLAL LSDSAHMASD  60
   61 VLALGLSMVA LYMATRPPNR RFTFGFLRFE IITSFLNGLT LAVIALWILW EGIQRFLHPE 120
  121 PINFRLMLGI AAIGLVVNLT LTIVLSRSTK EEDNLNVQSA LWHFIGDLIS SIGVIVSALL 180
  181 IYFTGWTVFD PIISLVIAAI IFTGGAKIMR ESYLILMEAV PDGFDLEQIR ADIRKIEGVE 240
  241 DVHDMHLWAI STDHYSLSAH VFVNERIQPL CVILAVNEML KEKYGIEHAT IQVEHAMLHD 300
  301 HGRYGRAFLE KKAFHE

Type	Start	End	Confidence
Cytoplasmic	1	23	0.97
Transmembrane Helix	24	45	0.92
Non-Cytoplasmic	46	54	0.79
Transmembrane Helix	55	75	0.92
Cytoplasmic	76	85	0.92
Transmembrane Helix	86	110	0.85
Non-Cytoplasmic	111	125	0.84
Transmembrane Helix	126	145	0.95
Cytoplasmic	146	159	0.91
Transmembrane Helix	160	182	0.91
Non-Cytoplasmic	183	187	0.75
Transmembrane Helix	188	209	0.87
Cytoplasmic	210	316	0.99