YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56381704, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETISLREL FDTLRKRLWL IVLITALATV VSGVVSYFLL TPIYQSSTQI LVNQAKSEQQ  60
   61 LYNFNEIQTN VQLINTYSVI IKSPTILEKV KDELHLDRTL DELNEQIQVS SEKDSQVFSV 120
  121 TVQDPDPAMA AKIANKTAEV FKNEIVKIMN IDNVTILSKA EVKEHQAPVK PKPLLNMAIA 180
  181 FVVGLMTGVG LAFLLEYLDN TIKTEEDVEK HLGLPVLGAV SLITAEGGQK ARRESAIPQT 240
  241 RGETIGS

Type	Start	End	Confidence
Cytoplasmic	1	17	0.94
Transmembrane Helix	18	40	0.94
Non-Cytoplasmic	41	176	0.93
Transmembrane Helix	177	195	0.58
Cytoplasmic	196	247	0.51