YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695434, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.93
Transmembrane Helix	25	44	0.94
Non-Cytoplasmic	45	94	0.90
Transmembrane Helix	95	118	0.90
Cytoplasmic	119	136	0.85
Transmembrane Helix	137	157	0.87
Non-Cytoplasmic	158	208	0.95
Transmembrane Helix	209	229	0.93
Cytoplasmic	230	247	0.95
Transmembrane Helix	248	270	0.92
Non-Cytoplasmic	271	289	0.92
Transmembrane Helix	290	313	0.89
Cytoplasmic	314	333	0.90
Transmembrane Helix	334	353	0.64
Non-Cytoplasmic	354	362	0.60
Transmembrane Helix	363	382	0.56
Cytoplasmic	383	390	0.38
Transmembrane Helix	391	413	0.90
Non-Cytoplasmic	414	422	0.43

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLTDPPKE QFRLSMLLYD TRYRSATIQV IAMIGFMLLA AWLISNTAQN LAALGKPIDF  60
   61 GFFSEPASYD INQRLLDYSS RDTHLRAAFI GLLNTLVVAV LGCITATVLG VIIGVLRLSN 120
  121 NWIVARLMTI YVEGFRNVPV LLWIVFIMAI LIETLPAPRA FRGDDATASM MLNDSVAVTN 180
  181 RGVYIPDALF SNSLGNVHLF GESSLRFDIS LDLMLILIVL GGSLWVSNFL RKRADRIQEQ 240
  241 TGDRPVTWWQ RLAVVVLPTG LVLVLLGFHL GYPELKGFNF QGGTHLRNSL IALWLALSLY 300
  301 TAAFIAEIVR AGILAISKGQ TEAASALGLR SNKIMSLVIL PQALRVIIPP LISNYLNLTK 360
  361 NSSLAIAVGY MDITGTLGGI TMNQTGRELE TILLLMLVYL TISLSISAVM NWYNESVKLK 420
  421 ER