YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677436, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.88
Transmembrane Helix	14	36	0.86
Cytoplasmic	37	48	0.91
Transmembrane Helix	49	70	0.93
Non-Cytoplasmic	71	76	0.78
Transmembrane Helix	77	97	0.93
Cytoplasmic	98	105	0.84
Transmembrane Helix	106	129	0.87
Non-Cytoplasmic	130	147	0.92
Transmembrane Helix	148	168	0.94
Cytoplasmic	169	182	0.88
Transmembrane Helix	183	204	0.89
Non-Cytoplasmic	205	211	0.67
Transmembrane Helix	212	233	0.90
Cytoplasmic	234	248	0.75
Transmembrane Helix	249	268	0.86
Non-Cytoplasmic	269	273	0.58
Transmembrane Helix	274	294	0.86
Cytoplasmic	295	300	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGIDDILLN FSPASLMLLN AILAVVMFSI AIDLTLDDFR RLSRGPKPVL VGLFSQFVVL  60
   61 PVLTFALVWL TAPHPSIALG LILVAACPGG NISNFITHRA GGNAALSVSM TAFATVGAIV 120
  121 MTPANIALWG SLYPPTRAIL QETHIDPVQI AITVGLMLIL PLILGVTLNM RRPALTARLR 180
  181 RPLQLLSMGI FIAFIILALA ANWGYFLSFA GAVAGLVILH NALALGGGWV VATLTRLSPY 240
  241 DRRAVTIETG IQNSGLGLVL IFAFFNGLGG MAVAAAFWGI WHAISGLGLA MIMSRTEARR 300
  301