YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678566, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	42	0.78
Non-Cytoplasmic	43	48	0.49
Transmembrane Helix	49	73	0.80
Cytoplasmic	74	78	0.74
Transmembrane Helix	79	98	0.91
Non-Cytoplasmic	99	106	0.75
Transmembrane Helix	107	127	0.94
Cytoplasmic	128	134	0.72
Transmembrane Helix	135	160	0.81
Non-Cytoplasmic	161	180	0.94
Transmembrane Helix	181	202	0.93
Cytoplasmic	203	221	0.94
Transmembrane Helix	222	243	0.92
Non-Cytoplasmic	244	269	0.91
Transmembrane Helix	270	292	0.87
Cytoplasmic	293	311	0.87
Transmembrane Helix	312	332	0.84
Non-Cytoplasmic	333	348	0.78
Transmembrane Helix	349	370	0.90
Cytoplasmic	371	376	0.68
Transmembrane Helix	377	398	0.88
Non-Cytoplasmic	399	407	0.74
Transmembrane Helix	408	436	0.85
Cytoplasmic	437	582	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQQLRGLAR TYLPILDWGR SYGRGELSGD LIAAVIVTVM LIPQSLAYAL LAGLPAEVGL  60
   61 YASILPLVAY ALFGTSRALA VGPVAVISLM TASALAPLNL SSVSEYVAAA GVLALLSGAM 120
  121 LLLMGALRLG VVANFLSHPV IAGFITASGL LIAASQLKHI LGVPLHGHTL PEILLDLARH 180
  181 LGQINLATLV TGIVALAFLF WVRKGLAQVF HARLGLTKPL AATLARVGPI FAVIGTTLAA 240
  241 WVLNLPSLGV AVVGEVPTGL PPLGLSGVDW GLVPALIGPA ALLSIIGYVE SVSVAQTLAT 300
  301 KRKQRIDPNQ ELIALGAANI SSSLSGGYPV TGGFARSVVN FDAGAETPAA GVFTAVGLLV 360
  361 AALFLTPLLY FLPKATLAAT IIVAVLSLVD LSILSRAWRY SRADFAAVFA TIALTLLAGV 420
  421 EVGVASGVLI SLLLFVWKTS RPHVAEVGQV PGSQHFRNIL RHKVETDPGV VTLRIDESLY 480
  481 FANARRMEDL ILNRVLRDRD SLRHVILMCS AVNEVDFSAL ESLEAINRRL DDLGVKLHLS 540
  541 EVKGPVMDRL ARSHFLEDLT GRVFLSQYDA FAALRMNRAD RM