YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680283, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRSHLHGA EELRAARRQS RGLYWFVALF SFFANLLMLT GPLYMLQVYD RVLGSRSEQT  60
   61 LVALSLLVVF LYGVMGILDY TRGRVMSRAG ARFQEALDQR VFDAMVRRSA VAQDPVAQTG 120
  121 LADLESVQRF IASPVAMAIF DLPWTPIFLF AIAIFHPWLG LLAVGGGVLL IGITGFNQLF 180
  181 SRKPALNAAI ANNRAGKMGD EIRTEAETIQ SMGMRRAAFD RWRKARVTSL TEGLTAGDVM 240
  241 GRFSTLTKTL RLFLQSAMLG LGAYLVLQGE LTPGAMIAAS ILMGRALAPV EMIVNQWQVV 300
  301 QRSLKGWSSL SELLEKAPPE NKRMDLPKPK AKLDVQSLTV VPPGDTRAQL KTVSFTVQPG 360
  361 QAIGVIGPSG SGKSTLARAL TGVWRPAGGT VRLDGAALDQ YDPDVLGQHI GYLPQRVQLF 420
  421 EGTIAENIAR LSGKPDAKKV VEAATKAAVH DMILQLPDGY DTHITAGGGR LSGGQMQRVG 480
  481 LARALYDDPV IVILDEPNSS LDNDGSVALN KAIRSLKEAG KSVLIMAHRP AAIAECDMLL 540
  541 VLDHGVRMAF GPKDQVLKEM VTNHQVIKGN KTMGGVR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	59	0.91
Transmembrane Helix	60	81	0.92
Cytoplasmic	82	129	0.97
Transmembrane Helix	130	154	0.80
Non-Cytoplasmic	155	158	0.62
Transmembrane Helix	159	180	0.89
Cytoplasmic	181	249	0.92
Transmembrane Helix	250	267	0.78
Non-Cytoplasmic	268	274	0.59
Transmembrane Helix	275	295	0.58
Cytoplasmic	296	577	0.59