YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680284, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQDFSARK PIILGLLGLI VLVGGFGTWA VLSQIAGAVV AGGRIEVDRN RQVVQHLDGG  60
   61 VVAEILVDEG DTVPEGQTLI RLDSNLLNSQ LLIAEGQLFE LMARRGRLEA ERDSNSEIVF 120
  121 DEDLLEAARA RAEVAELLDG QERLFRARQE SVTKETEQLE KRRGQIGNQI EGIVAQQRSR 180
  181 RSQLELIEQE LVSQQSLLDK GLAQAGRVLS LERTKAELEG ELGELIASQA QQEGRITEID 240
  241 IEILKLGTTQ REDAITQLRD LQYRELEVAE QRRSLLEQLS RLDIKAPVSG IVYGLQVHTP 300
  301 RSVIRPADPV LFLVPQDRPL VIAAKVETIH IDQIHLGQSV TLRFSALDQR LTPELIGTVM 360
  361 QVSADAFVDE ASQASYYRVE IQLNEGEVDK LPPGAILIPG MPVEAFIRTA DQSPIYYLVK 420
  421 PLADYFTKAF RET

Type	Start	End	Confidence
Signal Peptide	1	30	0.81
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	433	0.99