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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|65305459
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.37
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVAGYKVHV DTSRTNRYSS LYHDWFIISV GCFTYFLVGL SLTLVYVLCE MDYFMLSGLF  60
   61 RIQRFFSDDA YYFSKQVVLM YGVIGFIFTL VIGPIGKISC IVWSWILTLT YLVFGTCSYL 120
  121 FGFTQYGKLL IISISIISLI THILMCNFIF FLFDPMTNST KPTETKSPDE NSKKDEKDEN 180
  181 SEKSNGDYNT QKANRDRTKH LNAIGPYGSL VYYRVIMFLV GFFLGSPILL FVVRISLSVD 240
  241 TFSEKDPIMS SVDMCRIMML MFSISVMASI FLTLTFSNAS VTEYTLMPFR MISFRRLKKT 300
  301 MFNFFDIELL VVAWIINPLI MTLIPYTTRI HSEFHKFTLF HRLLFSLFLI SIMILMHRDI 360
  361 LYSCIRTIKL LNASIFNILY TDGYIQIDDE DLRKTPVSTT PYSNYTLGYY ADSVSMVPND 420
  421 ISVPSEVSYP YFDNGWDHVE NEDKKLLLRS YQILVSLRRL SHYINTGADI DIRNIYNDPD 480
  481 ISLCKPQIDT SDESETNPND PMKSTVYLLN EYKSELMSMI GNSIVGYSNH YSSVISNINY 540
  541 YLCYLRLSIL YNKLFLSFSF SSFCSIIVSC STSIVNNLKL ILSMNYNLYY IHRLSTHLHF 600
  601 VYNLISSIQY IEYLMQNMKL FISVIENFTL IGSYLNYLKC VRCLICKLQS FQCKLKKFEN 660
  661 LNCIIKNLEA FIKISCFLNC KSCDIKKVQC FTNELKKVQC FIIKFKCIEF DEYIKCIDCL 720
  721 IQNLCFLSKI NIITFSFILE CSKIVKYNIC ILEYIRCNIL NLQKIYEKIN LIQTLMTVIA 780
  781 NFRTYSTVLF SFEDAKSIVE SLRDIHCTIS CLEQLLIKIT CTENMDSFIC NLKMIECILQ 840
  841 RLKTVYCKID SIQTRIQKIN KCLKDSIELN TETLKCLELL VHQLICIEKL IKYFQAIEHL 900
  901 VHNLNYYFYI IQNLQSFLNT IIKHGILESS LKNSEKIKCL IKRLECLENI INDKKLINSI 960
  961 SCCLKYYKPI VALFNLIKCQ ISRSSYSIVK ITILSRTTRN KCQIIKAITI IMKNLVCINT1020
 1021 VLPCLEQIKC ISKLLESIKG VKPKLLAINC FITNLTIIDT LIQSVMSTKN ITVCLAISYD1080
 1081 RKLILACTNS NLQQNLILIN SLLSLKEYIV KFQDLSSIIN SIVSGISIFN NIKCIETIIS1140
 1141 RLAFVESYTN TLKYSNKYNI KYLKFSIESV GRQFLRCSAY STSIVLFDLT HDIIEDDSHT1200
 1201 SLSDQSLRPT IILQSVSILS KNLNDIIWTL FSHNQLEEFI FAISKSYKLF EIRKEIFHIL1260
 1261 KFADNCCCFC CLKPINRSFP SRQDLINKSQ LTGLNPHTLL LYDITVRGKL THQCLCLVIK1320
 1321 YRLKPSRLIS TCYFVDILFD FFNTSKRKFD KKTYLSSHTI DMAKFIYLII AATYKILILL1380
 1381 QQRYLCNCDK TCCTSDKSNS CTCCNGIKVP CCSCLKPKAD CKCCCKERKS CQQSCCKRTN1440
 1441 NNGTSCVCCR CCCICFCRCP DDQYYAYFIS MILFISQLLE DVFTFDNEKI RMATQYLSNL1500
 1501 ITDLNMMYLN PHKLRLNNSS TSGNQTNSVT SFNIGYEIKI SESSIELNLW LSKVLGTFNK1560
 1561 YSLIIKSLVL ITITEVKTSK FTSFCQKWSE LSFSLIKDKH VSSETKKHIT IITTLISEQY1620
 1621 MLTIKNQGSP TALKCCTDKC KCKCCKIICV CIRLFSNKLK LIACQLTETG ILDLMNSSFN1680
 1681 HEELNQLASD KIKMINNSSE SLIKSSKNSR ISDSTSSMIY GSDFDHINPK YFGYDDVYRP1740
 1741 HPHFGSGYFK FVLSRVFIVI ILLFMFIFIR TRFDRFVKPD IFGAYLIKVD SNINRFREVL1800
 1801 HNRLGHSIRN IGRIGSLDSL FDDMPDPSHH LVFEYPELAD IQDLKSWSES DSISDTFTDA1860
 1861 IYDEQSRTVQ ESRRRKVAFY IFIVVFSLLS SLYLNFVVRD LSVMLNLDHN TWSYFISITI1920
 1921 LMGMLISLVV KYCVHLYDFV YVLEKYSNRL TKIESFVDDS FGGITGNLSY TSKFLILFQL1980
 1981 LRSLKTDIVS LFSMNYPYHI PAQSLMKNKV YPYKDMTTDM ERMMTCENIE CIRNMVLEII2040
 2041 GTPESMDLQN ILDFISYAAI RNSSEFDKYH GYFSGNERYL AWRLGKLLSH NFFLLTYGRY2100
 2101 SCILEMDHII RNLQVPITQF HNCQMLWQLF GNYESNLISL KCLGEESIGV PLTAIQRDVL2160
 2161 RNKFNEEYVG EFTKYQEFIM RNLHINIDDA DDEECSCYFP YPELIKCPLD RDKVARLTRE2220
 2221 YFGDNRRLSL SLPTTNCNVT KQISNQTKSS SVSVTKFCDH WLNMRLGYCD TEECEKAVRF2280
 2281 AHELVVSKLS SDSDVFESIK ETIASLKLNI LNTEEVYETP EDIHVPIKSS EHKSLKDYTN2340
 2341 KLNELRYKTS DNYQDTVLDY LNRYMMETMT NTEKIMVPLG IFLSWYGIPI CEEHIRNMGK2400
 2401 FQYLI

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