YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72162102, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.93
Transmembrane Helix	26	44	0.93
Non-Cytoplasmic	45	50	0.77
Transmembrane Helix	51	71	0.93
Cytoplasmic	72	91	0.92
Transmembrane Helix	92	113	0.93
Non-Cytoplasmic	114	163	0.94
Transmembrane Helix	164	179	0.95
Cytoplasmic	180	188	0.82
Transmembrane Helix	189	210	0.95
Non-Cytoplasmic	211	221	0.81
Transmembrane Helix	222	243	0.86
Cytoplasmic	244	249	0.87
Transmembrane Helix	250	266	0.95
Non-Cytoplasmic	267	273	0.71
Transmembrane Helix	274	293	0.92
Cytoplasmic	294	309	0.90
Transmembrane Helix	310	332	0.86
Non-Cytoplasmic	333	337	0.85
Transmembrane Helix	338	359	0.89
Cytoplasmic	360	375	0.86
Transmembrane Helix	376	395	0.96
Non-Cytoplasmic	396	690	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDAPAVPP RARPSRPMPR RFLPEVQGLR AVAVLLVLVY HLNAAVLPGG YVGVDVFFVI  60
   61 SGFLITSLLL REVHDHGRIS VSQFYIRRVR RILPAATLVL LATGIATVLL LPVTRLEQAA 120
  121 LELAASAAYI ENFVLAAQTV DYLAAEEAPS PVQHFWSLAV EEQFYLVWPL LFVGWAALRS 180
  181 RLSEQRRELV LGGAITVIIT ASLICSVVMT QTDPTSAYFV PFTRMWELAA GGLLAVVLAR 240
  241 WNLPDRLRDP VGWAGLVAIG VAAVYYNEHT AFPGYAAALP VLGAAAVIAA GEGRSRYSAG 300
  301 QLLSTRPARF IGDISYALYL WHWPLIVIAL GMFNETELSF GTAVALGALS ILLAWLTKIT 360
  361 VEDPIRMRGL LSTGRTALAF ALSGIIVVSG TAWGINSHVQ QIRSVEFNPE VHLGPQALDE 420
  421 EDRPEELTAP PYPSVLTAED DLPDLYEDGC QSSEEDTFPS PCVYGPDDAE TTVALVGDSH 480
  481 AAHWSPALQE IAEDRDWQLY TFTKSSCAFT ATLLVRPGEE TPYTQCQLWT ENVLSELHKL 540
  541 DPDFVITSSR AKATPYGMDG DEEEARRAVA EGMSALWQLL DEAGITVVAL RDTPTTRSRI 600
  601 VECIDLHSPD VEACVRERDS ALNGEDPQVI AAEEGDVDTP IVDLSDRFCL DDICPAVIGN 660
  661 VLVYRDSHHI TATYSRLLSD DLAERLEEVL