YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56202374, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.69
Transmembrane Helix	89	109	0.80
Non-Cytoplasmic	110	115	0.78
Transmembrane Helix	116	140	0.87
Cytoplasmic	141	160	0.90
Transmembrane Helix	161	181	0.92
Non-Cytoplasmic	182	186	0.74
Transmembrane Helix	187	204	0.95
Cytoplasmic	205	212	0.77
Transmembrane Helix	213	233	0.92
Non-Cytoplasmic	234	247	0.76
Transmembrane Helix	248	268	0.81
Cytoplasmic	269	286	0.87
Transmembrane Helix	287	306	0.90
Non-Cytoplasmic	307	312	0.77
Transmembrane Helix	313	333	0.92
Cytoplasmic	334	342	0.86
Transmembrane Helix	343	361	0.76
Non-Cytoplasmic	362	435	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRGGATAAS AARALRSRLI PDTSHHPATA LAPIASPRSS SSSSSSSAPT IAAAVPAVAE  60
   61 ATAAAAAVSR QAGSVSDALR HYGRCYFELS KARLSALVVA TSGAGYVLGS GNMVDIAGLC 120
  121 CTCAGTMMVA ASANTLNQVF EIKNDAKMKR TMRRPLPSGR ISPAHAAMWA TSVGVAGTAL 180
  181 LAWKANGLAA GLAASNLILY AFVYTPLKQI HPVNTWVGAV VGAIPPLLGW AAASSELSLN 240
  241 AMILPAALYY WQIPHFMALA YLCRNDYLAG GYRMFSFADP TGKRTAWVSL RNCLYMLPLG 300
  301 FFAYNWGLTS EWFSLEASLL TLGLTIGALS FVLEPTPKTA RRMFYGSLLY LPAFMAGLLL 360
  361 HRLPNEQKEH NVTQTSEITG ILYGAEQQDE ERARQKREDR KPSRIHSRPP VAYASVAPFP 420
  421 FLPVPIYVST QGHEL