YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34923184
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVFSNLRGP KIGLTHEELP VVANGSTSSS SSPSSFKRKV STFLPICVAL VVIIEIGFLC  60
   61 RLDNASLVDT LTHFFTKSSS DLKVGSGIER CQEWLERVDS VTYSRDFTKD PIFISGSNKD 120
  121 FKSCSVDCVM GFTSDKKPDA AFGLSHQPGT LSIIRSMESA QYYQENNLAQ ARRKGYDIVM 180
  181 TTSLSSGVPV EYFSWAEYDI MAPVQPKTEK ALAAAFISNC AARNFRLQAL EALMKTNVKI 240
  241 DSYGGCHRNR DGSVEKVEAL KHYKFSLAFE NTNEEDYVTE KFFQSLVAGS VPVVVGAPNI 300
  301 EEFAPSPDSF LHIKQMDDVK AVAKKMKYLA DNPDAYNQTL RWKHEGPSDS FKALIDMAAV 360
  361 HSSCRLCIFV ATRIREQEEK SPEFKRRPCK RTRGSETVYH LYVRERGRFD MESIFLKDGN 420
  421 LTLEALESAV LAKFMSLRYE PIWKKERPAS LRGDGKLRVH GIYPIGLTQR QALYNFKFEG 480
  481 NSSLSTHIQR NPCPKFEVVF V

Type	Start	End	Confidence
Cytoplasmic	1	39	0.72
Transmembrane Helix	40	59	0.68
Non-Cytoplasmic	60	501	0.99