YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66268793
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.91
Transmembrane Helix	14	38	0.90
Cytoplasmic	39	48	0.88
Transmembrane Helix	49	71	0.92
Non-Cytoplasmic	72	87	0.93
Transmembrane Helix	88	108	0.93
Cytoplasmic	109	128	0.88
Transmembrane Helix	129	150	0.91
Non-Cytoplasmic	151	172	0.95
Transmembrane Helix	173	198	0.84
Cytoplasmic	199	368	0.99
Transmembrane Helix	369	388	0.98
Non-Cytoplasmic	389	409	0.87
Transmembrane Helix	410	429	0.94
Cytoplasmic	430	457	0.84
Transmembrane Helix	458	480	0.87
Non-Cytoplasmic	481	510	0.77
Transmembrane Helix	511	530	0.71
Cytoplasmic	531	542	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHQDPYSVQ ATAAIAAAIT FLILFTIFGN ALVILAVLTS RSLRAPQNLF LVSLAAADIL  60
   61 VATLIIPFSL ANELLGYWYF RRTWCEVYLA LDVLFCTSSI VHLCAISLDR YWAVSRALEY 120
  121 NSKRTPRRIK CIILTVWLIA AVISLPPLIY KGDQGPQPRG RPQCKLNQEA WYILASSIGS 180
  181 FFAPCLIMIL VYLRIYLIAK RSNRRGPRAK GGPGQGESKQ PRPDHGGALA SAKLPALASV 240
  241 ASAREVNGHS KSTGEKEEGE TPEDTGTRAL PPSWAALPNS GQGQKEGVCG ASPEDEAEEE 300
  301 EEEEEEEEEC EPQAVPVSPA SACSPPLQQP QGSRVLATLR GQVLLGRGVG AIGGQWWRRR 360
  361 AQLTREKRFT FVLAVVIGVF VLCWFPFFFS YSLGAICPKH CKVPHGLFQF FFWIGYCNSS 420
  421 LNPVIYTIFN QDFRRAFRRI LCRPWTQTAW LSPPALPLWG WCGGAGVTLL LALLCVAASP 480
  481 GLSAPCPDPV GLILGTPWEG WAGGLLARVP VKLPLAGLAV GDPFSTLSLS TGRWRWFKSS 540
  541 GT