YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG13794-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.94
Transmembrane Helix	29	51	0.88
Non-Cytoplasmic	52	60	0.73
Transmembrane Helix	61	80	0.86
Cytoplasmic	81	99	0.69
Transmembrane Helix	100	126	0.83
Non-Cytoplasmic	127	206	0.92
Transmembrane Helix	207	229	0.89
Cytoplasmic	230	237	0.86
Transmembrane Helix	238	260	0.90
Non-Cytoplasmic	261	280	0.80
Transmembrane Helix	281	303	0.84
Cytoplasmic	304	315	0.68
Transmembrane Helix	316	338	0.89
Non-Cytoplasmic	339	378	0.89
Transmembrane Helix	379	400	0.93
Cytoplasmic	401	417	0.91
Transmembrane Helix	418	441	0.89
Non-Cytoplasmic	442	448	0.85
Transmembrane Helix	449	469	0.96
Cytoplasmic	470	489	0.97
Transmembrane Helix	490	512	0.96
Non-Cytoplasmic	513	520	0.77
Transmembrane Helix	521	545	0.88
Cytoplasmic	546	595	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYETSYDSG HKPFSPDLKR GKWDKPTDYI FACFGLALKL DIFVASYWFF FDMGIFGMLP  60
   61 YLVYMVIYLV PIMVIHSFMG QFSSSGFISA FRLSPFFKGM GYVSVFLTIS MLIYYSIFAA 120
  121 VPLLFMINSF RPTLPWSCEG FKSWYNESDG KMTTCNMTIS EDLTDNSDNN TDFHRPHFHV 180
  181 PSVLYFLKHF ESVQEENYSD LRQDYDLSWR FVSLFVLVWA MVAFIFYKFS ETAMFGKFIR 240
  241 YMVIGTLILL LVCFGRFLFL PGALLGLRKY VTPSPDEIAM GIGSTFVMVL HAFGAGWGSV 300
  301 IALSSFNGFK TDIMSYSWII SFGQIFIFTM FGLVSYMLDH YYNEGIEGSF DKQVLTHWAL 360
  361 YLSSATALSS LGWPNLWTFI YYTMLLMAAL IVITTQIFTV LQSLFDEFEV LRVRKQEVTF 420
  421 GLIGGIAVCS FYFCTNHGIT FFSALALDAI FSHSLLHLLL LLVVLWIYGR ERFQRDIEFM 480
  481 LGQPFASWKV YILRFIAPII LIICLVVGIL VCYMEHIYSS AIVLGMSIIL VILPILAIPG 540
  541 YGIYYIYRST GSFCERFKRT CRPTDWYPVE MEHRQQYEEA VSNTDMTQQL TAGPN