YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218188395
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.91
Transmembrane Helix	7	28	0.89
Cytoplasmic	29	102	0.90
Transmembrane Helix	103	123	0.89
Non-Cytoplasmic	124	154	0.92
Transmembrane Helix	155	174	0.91
Cytoplasmic	175	371	0.98
Transmembrane Helix	372	391	0.91
Non-Cytoplasmic	392	423	0.90
Transmembrane Helix	424	444	0.90
Cytoplasmic	445	463	0.85
Transmembrane Helix	464	483	0.95
Non-Cytoplasmic	484	510	0.89
Transmembrane Helix	511	529	0.60
Cytoplasmic	530	571	0.63
Transmembrane Helix	572	600	0.81
Non-Cytoplasmic	601	621	0.62
Transmembrane Helix	622	642	0.85
Cytoplasmic	643	768	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATIQDIGVS AAINILSAIT FLLAFAFLRL QPINDRVYFP KWYLKGARES PSHGGAFVRK  60
   61 FVNLDMRSYL KVLSWMPAAL KMPEDELISH AGLDSAVYLR IYLIGLKIFA PITVLAFIIL 120
  121 VPVNWTNITL QSSKVQHSDI DKLSISNIPV GSKRFAAHLT MAYVFTFWTC YVLLREYEIV 180
  181 ATMRLRFLAS EKRRPDQFTV LVRNIPPDPD ESIGELVEHF FLVNHPDHYL THQVVYNANK 240
  241 LDKMVKEKKK MQNWLDYYQL KYERNTSQRP TTKTGFLGCF GSKVDAIEYY TSEIERIEKE 300
  301 ETDERGKIMK DPKSVVPAAF VSFRSRWGAA VCAQTQQTSN PTVWLTEWAP EPRDVYWDNL 360
  361 SIPFVYLTIR RLIIAVAFFF LNFFYVLPIA FVQSLANIEG IEKAAPFLKP LIEMRTIKSF 420
  421 IQGFLPGIAL KIFLILLPSI LMFMSKVEGL TSVSSLERRS AFKYYIFLFF NVFLGSIIAG 480
  481 SALEQLKTFL HQSANEIPRT IGEAIPMKAT FFITYVMVDG WAGVAGEILR LKPLIIFHLK 540
  541 NFFLVKTEKD REEAMDPGSI GFDSNEPQIQ LYFLLGLVYA VVTPFLLPFI LIFFGLAYVV 600
  601 YRHQIINVYN QEYESAAAFW PSVHGRIIVA LIVSQLLLLG LLSTKGAGQS TPVLLVLPVV 660
  661 TFYFYKYCKN RYEPAFVEYP LQDAMRKDTL ERAREPGFDL KGYLMNAYIH PVFKGDEDDE 720
  721 KFSISDEPEA EQVLVATKRQ SRRNTPVPSK YNGSESPSLA EIVNDQRL