YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62089214
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAFIRRRGWW PGPRCAPATP RPLSWLRAPT RLCLDGPSPV LCAGLEHQLT SDHCQPTPSH  60
   61 PRRLHLWAPG IKQVLGCTMI SPFLVLAIGT CLTNSLVPEK EKDPKYWRDQ AQETLKYALE 120
  121 LQKLNTNVAK NVIMFLGDGM GVSTVTAARI LKGQLHHNPG EETRLEMDKF PFVALSKTYN 180
  181 TNAQVPDSAG TATAYLCGVK ANEGTVGVSA ATERSRCNTT QGNEVTSILH WAKDAGKSVG 240
  241 IVTTTRVNHA TPSAAYAHSA DRDWYSDNEM PPEALSQGCK DIAYQLMHNI RDIDVIMGGG 300
  301 RKYMYPKNKT DVEYESDEKA RGTRLDGLDL VDTWKSFKPR YKHSHFIWNR TELLTLDPHN 360
  361 VDYLLGLFEP GDMQYELNRN NVTDPSLSEM VVVAIQILRK NPKGFFLLVE GGRIDHGHHE 420
  421 GKAKQALHEA VEMDRAIGQA GSLTSSEDTL TVVTADHSHV FTFGGYTPRG NSIFGLAPML 480
  481 SDTDKKPFTA ILYGNGPGYK VVGGERENVS MVDYAHNNYQ AQSAVPLRHE THGGEDVAVF 540
  541 SKGPMAHLLH GVHEQNYVPH VMAYAACIGA NLGHCAPASS AGSLAAGPLL LALALYPLSV 600
  601 LF

Type	Start	End	Confidence
Cytoplasmic	1	69	0.55
Transmembrane Helix	70	89	0.50
Non-Cytoplasmic	90	602	0.90