YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109105682, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	136	0.72
Transmembrane Helix	137	156	0.90
Cytoplasmic	157	164	0.73
Transmembrane Helix	165	183	0.81
Non-Cytoplasmic	184	189	0.67
Transmembrane Helix	190	211	0.86
Cytoplasmic	212	220	0.79
Transmembrane Helix	221	243	0.88
Non-Cytoplasmic	244	249	0.76
Transmembrane Helix	250	269	0.94
Cytoplasmic	270	334	0.98
Transmembrane Helix	335	357	0.89
Non-Cytoplasmic	358	366	0.79
Transmembrane Helix	367	386	0.89
Cytoplasmic	387	396	0.73
Transmembrane Helix	397	416	0.90
Non-Cytoplasmic	417	426	0.67
Transmembrane Helix	427	446	0.84
Cytoplasmic	447	455	0.72
Transmembrane Helix	456	477	0.65
Non-Cytoplasmic	478	485	0.54
Transmembrane Helix	486	504	0.76
Cytoplasmic	505	550	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNDLLQQV GGVGRFQQIQ VTLVVLPLLL MASHNTVQNF TAAIPTHHCR PPANANLSKD  60
   61 GGLEAWLPRD RQGQPESCLR FTSPQWGPPF PNGTEANGTG ATEPCTDGWI YDNSTFPSTI 120
  121 VTEWDLVCSH RALRQLAQSL YMVGVLLGAM VFGYLADRLG RRKVLILNYL QTAVSGTCAA 180
  181 FAPNFPIYCA FRLLSGMSLA GIALNCMTLN VEWMPIHTRA CVGTLIGYVY SLGQFLLAGV 240
  241 AYAVPHWRHL QLLISVPFFA FFIYSWFFIE SARWHSSSGR LDLTLRALQR VARINGKREE 300
  301 GAKLSMEVLR ASLQKELTMG KGQASAMELL RCPTLRHLFL CLSMLWFATS FAYYGLVMDL 360
  361 QGFGVSIYLI QVIFGAVDLP AKLVGFLVIN SLGRRPAQMA ALLLAGICIL LNGVVPQDQS 420
  421 VIRTSLAVLG KGCLAASFNC IFLYTGELYP TMIRQTGLGM GSTMARVGSI VSPLVSMTTE 480
  481 LYPSVPLFIY GAVPVAASAV TVLLPETLGQ PLPDTVQDLE SRKGKQTPQQ QEHQKYMVPL 540
  541 QASAQEKNGL