YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71834426, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAYPTDLNS SETDEDDGLM DWWKTVEGWS EWNQTSNFQE DDEELAVEAA ADRVFMAARL  60
   61 FVSLFNQRGA SLQCRIMELL ALADAADSFH KKTVSAAIGG GVASVAGGIA TITGLILAPF 120
  121 TFGTSTIVTA VGISVATAGS ITSATANITD AVQSKIDRKK VEKMIQGYQS EITDIRDCLE 180
  181 FMQEGMNTLQ EWDFKDYSDS VVNTSLNRNI KYVMKEGGRA GKALLINTDR LVSTVKVLGV 240
  241 AGGAAKAAKA ISITTGVMST LFLALDVFFL AKDSNELRKG AKTKFASKIR EVCKELQHGL 300
  301 LELNKVKTQL QKTMDGIEVE EYEEDEEDED PCVSDPIKLA LLEQELDQIE EKLDQKGLQD 360
  361 QMNKSKKAET EEKTTKKTNN KE

Type	Start	End	Confidence
Cytoplasmic	1	95	0.97
Transmembrane Helix	96	118	0.90
Non-Cytoplasmic	119	126	0.69
Transmembrane Helix	127	149	0.82
Cytoplasmic	150	250	0.87
Transmembrane Helix	251	270	0.51
Non-Cytoplasmic	271	382	0.50