YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86749938, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLFMNGFN TLSHGIVGYV VPFLFVLTIV VFFHELGHFL VARWNGVRVL TFSLGFGPEI  60
   61 AGFNDRHGTR WKLSAIPLGG YVKFFGDESE ASTPSTDSLS KMSAEERSVS FHHKKVGPRA 120
  121 AIVVAGPLAN FILAIVLFTF LFSVFGVPST SARVDNIQPG SAAEAGGFKP GDIVVAIDGS 180
  181 PIQNFQEMQR TVSREAGRQL DFTVKRGTET VDLKATPELR EIKDRFGNAQ RLGILGISRS 240
  241 TSANEVTTER LNPAAAAWMG VKETWFVVDR TFAYIGGLFA GREAADQLGG PLRIAQISGQ 300
  301 VATIGFTPLL HLAAVLSISI GLLNLFPVPL LDGGHLMFYA IEAVRGRPLS ERAQEMGFRI 360
  361 GLGLVLMLMV FATYNDILHL ASS

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.56
Transmembrane Helix	15	34	0.93
Cytoplasmic	35	119	0.53
Transmembrane Helix	120	144	0.84
Non-Cytoplasmic	145	306	0.57
Transmembrane Helix	307	336	0.72
Cytoplasmic	337	355	0.70
Transmembrane Helix	356	378	0.87
Non-Cytoplasmic	379	383	0.73