YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86569010, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTTPARSA SPAPTPRPPR SSSVLRNLWR STIGKKTVMA VTGLLMLLFL IAHMLGNLKI  60
   61 FFGRDDFDHY AGWLRTIGEP VLHDTWYLWI QRVVLVLAVG LHTVSAYQLS RRDLRARPTK 120
  121 YVHRQRARAS YATHVMRYGG ITLALFIVYH ILDFTTLTLN RHGVEGAAYD NVVSSFSVWW 180
  181 VTLIYIAAMI SLGLHIQHGF WSAAQTLGVN NPKRDRVFKA TANVLAVLLT VGFVIVPVSV 240
  241 LAGLVD

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	56	0.92
Non-Cytoplasmic	57	87	0.93
Transmembrane Helix	88	109	0.93
Cytoplasmic	110	133	0.89
Transmembrane Helix	134	152	0.95
Non-Cytoplasmic	153	177	0.90
Transmembrane Helix	178	201	0.85
Cytoplasmic	202	220	0.92
Transmembrane Helix	221	244	0.89
Non-Cytoplasmic	245	246	0.87