YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67969859
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVAKLIQCI VFGPLRVSER QHLKDKFWNF IFYKFIFIFG VLNVQTVEEV VMWCLWFAGL  60
   61 VFLHLMVQLC KDRFEYCAFQ LSFSPTTPMS SHGRVLSLLV AMLLSCCGLA AVCCITGYTH 120
  121 GMHTLAFMAA ESLLVTVRTA HVILRYVIHL WDLNHEGTWE GKGTYVYYTD FVMELTLLSL 180
  181 DLMHHIHMLL FGNIWLSMAS LVIFMQLRYL FHEVQRRIRR HKNYLRVVGN MEARFAVATP 240
  241 EELAVNNDDC AICWDSMQAA RKLPCGHLFH NSCLRSWLEQ DTSCPTCRMS LNIADNNRVR 300
  301 EDHQGENLDE NLVPVAAAEG RPRLNQHNHF FHFDGSRIAS WLPSFSVEVM HTTNILGITQ 360
  361 ASNSQLNAMA HQIQEMFPQV PYHLVLQDLQ LTRSVEITTD NILEGRIQVP FPTQRSDSIR 420
  421 PALNSPVERP SSDQEEGETS AQTERVPLDL SPRLEETLDF GEVEVEPSEV EDFEARGSRF 480
  481 SKSADERQRM LVQRKDELLQ QARKRFLNKS SEDDAASESF LPSEGASSDP VTLRRRMLAA 540
  541 AAERRLQKQQ TS

Type	Start	End	Confidence
Cytoplasmic	1	29	0.89
Transmembrane Helix	30	47	0.84
Non-Cytoplasmic	48	51	0.63
Transmembrane Helix	52	70	0.73
Cytoplasmic	71	94	0.68
Transmembrane Helix	95	119	0.89
Non-Cytoplasmic	120	188	0.54
Transmembrane Helix	189	211	0.89
Cytoplasmic	212	552	0.72