YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTHD1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.77
Transmembrane Helix	20	40	0.87
Non-Cytoplasmic	41	270	0.91
Transmembrane Helix	271	292	0.82
Cytoplasmic	293	303	0.84
Transmembrane Helix	304	326	0.94
Non-Cytoplasmic	327	334	0.83
Transmembrane Helix	335	356	0.86
Cytoplasmic	357	372	0.88
Transmembrane Helix	373	396	0.80
Non-Cytoplasmic	397	411	0.72
Transmembrane Helix	412	434	0.73
Cytoplasmic	435	697	0.69
Transmembrane Helix	698	721	0.89
Non-Cytoplasmic	722	726	0.52
Transmembrane Helix	727	749	0.84
Cytoplasmic	750	798	0.68
Transmembrane Helix	799	817	0.91
Non-Cytoplasmic	818	829	0.70
Transmembrane Helix	830	851	0.95
Cytoplasmic	852	897	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQVIHRGL KASFYWLGLF VSRHPVFFLT VPAVLTIIFG STVLSRFKPE TDLEILVAPT  60
   61 HSLAKIERSL ANSLFPIDQS KHKLYSDLHT PGRYGRLILL ARSGGNILEL AEQVLQVHKK 120
  121 VLDMRVNYKG FNYTFAHLCV LRHRDKRCLL DDIITIFEDI RLAVLSNSTF SKVPVSYPNT 180
  181 TLKDGRVSFI GHQLGGVALP ANNRDQQVKF ARAIQITYYL RNLGPVVQDI IAEKWETEFC 240
  241 KLVHQLATDS QELHIQSLTS FSLWRDFHKT GVLAKSEVLV SLVLVLLAAT ISSSMRDCLR 300
  301 GKPFLGLLGV LTICIANVTA AGIFFISDGK FNSTLLGIPF FAMGHGTKGV FELLAGWRRT 360
  361 RESLPFKERV ADAFADVMVC YTMTSSLYII TFGMGASPFT NIESVKVFCQ SMCVAVLVNY 420
  421 FYVFSFYGSC LVFAGQLEQN RYHSVFCCKI PSVEYLDRQP TWFKTMMSDG HDLSTHHDSV 480
  481 PYQNHFIQHF LREHYTEWIT NTYVKPFVVI LYLIYASFSF MGCLQISDGS NIINLLASNS 540
  541 PSVSFALTQQ KYFSNYSPVI GFYIYEPIEY WNSTVQEHLK TLGQGFNKIS WIDNYFHFLR 600
  601 VVNISASTKS DFISILKTSF LRSPEYQHFV DDIIFSKNGA EYDIIASKMY LVARTTEKTR 660
  661 EEVVELLERL RPLSLINSIK FIVFNPTFVF MDRYSSSIIS PILTSGFSVL TILILTFFLV 720
  721 INPLGNFWLI LTVTSVELGV LGLMTLWNVD MDSISILCLI YTLNFAMDHC APHLYTFVLA 780
  781 TEHTRTQCIK ISLEEHGAAI LQNTSCFVIG IMPLLFVPSN LTYTLFKCSL LTAGCTVLHC 840
  841 FVILPVFLTF FPPSKKRHKK KKRAKRKERE RERERERERE EIECIEVREN PDHVTNV