YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCO2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLRVFDRH KRLWSVLQST IRGNNISNHI PNTTCRSSAP PHLCARQRAF YSQNSPKTPN  60
   61 PGSSAGIKLR TRLVVTLLFG GGIIGTWWYV HQEKEKRIQM QRLEQLRKVA LGQGDFHLLD 120
  121 HTGQRRTKRD FLGHWVLLYF GFTHCPDICP DELEKLTSVV HILDKDPSLP SVQPLFITVD 180
  181 PERDDVSAMA RYVKDFHPRL VGLTGSAEEV KQAGRDFRVY ASNGPKDEDG DYIVDHSIVI 240
  241 YLVNPDGLFI DYYNRMKNDT QIAESIRNHM KTFVRLFPD

Type	Start	End	Confidence
Cytoplasmic	1	72	0.90
Transmembrane Helix	73	91	0.93
Non-Cytoplasmic	92	279	0.96