YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62550856
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	386	0.99
Transmembrane Helix	387	408	0.92
Cytoplasmic	409	417	0.92
Transmembrane Helix	418	441	0.86
Non-Cytoplasmic	442	449	0.89
Transmembrane Helix	450	471	0.92
Cytoplasmic	472	490	0.91
Transmembrane Helix	491	509	0.93
Non-Cytoplasmic	510	529	0.87
Transmembrane Helix	530	551	0.94
Cytoplasmic	552	563	0.78
Transmembrane Helix	564	585	0.88
Non-Cytoplasmic	586	614	0.87
Transmembrane Helix	615	633	0.94
Cytoplasmic	634	648	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVRNFRNSL LVTLFGLFIS MSVWASTNYA PLIEDIEQRL DKTAELYQQQ HADEARRTVQ  60
   61 MAYFEVFENL EGPIRINISA RKSYEMESAF GEIRRMIGEK KPLADVQARI DWLKAALREV 120
  121 EPVLDGGHRL VAEEQHNALS RDDIAVHWQE SFRTIDDLLA QAVTEYQAGN YSVASQHVQQ 180
  181 AHYQGFKNSE MEMSLRQNRS AKDAASINQQ FSSLIALTAQ PDHLNDVSYQ VTTLLQDIED 240
  241 ILPGLPTTRD DQQVAAAQSA DNIPAADEGN NRTDWAEVTT GINQSIQDAI ARYQGGDAKN 300
  301 AILDIQDTYF DRFEASGMEN KIGSRDSAFK TTLEAYFTRL VSLMKAGQPV ERLNAEASAL 360
  361 TQDLQKAVTM LGEGEETQWS LLLYSLMIIV REGLEALLIV AAIVAYMVKN NHQDKLPLIR 420
  421 QSVIVALIAS VITAAIFQML FTNSGASREL LEGITMLIAV VMLFFMSYWL LSKVEARHWK 480
  481 AWLEGKLSHS LSRGSLVGLW LTSFLAVYRE GAETVLFYYA LIGDANTVSG HMAIGAGFVI 540
  541 GCVVLLLAWL VMRYSVVRLP LKPFFMFTGS FMYLMAFVFA GKGVLELVEG KLFQPTLING 600
  601 FPEISWLGIY PYVETLLPQV VLLLAALVAL WVMRRKSAVP GETIKNNP