YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|64966488
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYSDPTASR DLLGNRSLCF IFICAFGLVT LLQQILYGKN YIKRMILSMQ CFSPACLETP  60
   61 LLVLFLMVQS INVPRSTGVL ITQSSPMGYN LDSDAFLFLE SESVKNLHLT EDNLWQPFIS 120
  121 SHPCNLMPNV LFWLQDMPFS KSQFKKCAVI GNGGIIKNSK CGREIDASDF VFRCNIPPVS 180
  181 DLYSQDVGSK TDLVTINPSI ITERFQKLEK WRKPFYEVLQ NYENSSVVLP AFYNTRNTDV 240
  241 SFRVKYMLDD FESSRGVFFF HPQYLLNVQR FWAVQGVRAK RLSSGLMLVT AAMELCEEVH 300
  301 LYGFWAFPMN PSGIFITHHY YDNVKPRPGF HAMPYEIFNF MHMHARGIVH VHTGPC

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.58
Transmembrane Helix	17	37	0.90
Cytoplasmic	38	45	0.60
Transmembrane Helix	46	68	0.74
Non-Cytoplasmic	69	356	0.72