YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56417699
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIASQFLSAL TLVLLIKESG AWSYNTSTEA MTYDEASAYC QQRYTHLVAI QNKEEIEYLN  60
   61 SILSYSPSYY WIGIRKVNNV WVWVGTQKPL TEEAKNWAPG EPNNRQKDED CVEIYIKREK 120
  121 DVGMWNDERC SKKKLALCYT AACTNTSCSG HGECVETINN YTCKCDPGFS GLKCEQMVEC 180
  181 DAVTNPANGF VECFQNPGSF PWNTTCTFDC EEGFELMGAQ SLQCTSSGNW DNEKPTCKAV 240
  241 TCRAVRQPQN GSVRCSHSPA GEFTFKSSCN FTCEEGFMLQ GPAQVECTTQ GQWTQQIPVC 300
  301 EAVRCDAVHQ PPKGLVRCAH SPIGEFTYKS SCAFSCEEGF ELHGSTQLEC TSQGQWTEEV 360
  361 PSCQVVKCSS LAVPGKINMS CSGEPVFGTV CKFACPEGWT LNGSAARTCG ATGHWSGLLP 420
  421 TCEAPTESNI PLVAGLSAAG LSLLTLAPFL LWLRKCLRKA KKFVPASSCQ SLESDGSYQK 480
  481 PSYIL

Type	Start	End	Confidence
Signal Peptide	1	23	0.96
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	431	0.99
Transmembrane Helix	432	453	0.93
Cytoplasmic	454	485	0.97