YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62733420
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAGISTRLN QWWGSIPFIT SGVILICGAI YLVCLLTGYD SFAEICFLPS VVASRFQVYR  60
   61 FYTSVVFHGS LLHVLFNMLA LVPLGTELER IMGSVRLLFL MFLLATTNAI FHLIIAFLAA 120
  121 YNPLYPLHFL VDECSIGFSG VIFSMIVIET SLSGVQTRSV FGLFNVPANW YAWILLVLFQ 180
  181 FLASNVSLLG HLCGILSGFA YTYGLFNYLL PGPSFYSSIE GLSVLSVCVR RPGFILCTGG 240
  241 TTYGQLPTFS NTSTAPSALI NANFLRNISS WIPSRQTTTT QGNTQEQDPR FPGRARTLSS 300
  301 AGTEPTAREA SANLHASLLD STTPSDPLTS SQHPAANTVR ADATVAADQV DTFDEELKKL 360
  361 VGMGFEKTQA EVALAAADGD PNVAIEILMS QQG

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	35	0.87
Non-Cytoplasmic	36	63	0.84
Transmembrane Helix	64	85	0.86
Cytoplasmic	86	96	0.85
Transmembrane Helix	97	120	0.91
Non-Cytoplasmic	121	128	0.82
Transmembrane Helix	129	148	0.83
Cytoplasmic	149	160	0.62
Transmembrane Helix	161	183	0.78
Non-Cytoplasmic	184	187	0.59
Transmembrane Helix	188	210	0.75
Cytoplasmic	211	393	0.59