YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62208141
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQVKERTL EETSTWAVAV VCFVLLFISI VLEHSIHKIG SWFKQKHKKA LYEALEKVKA  60
   61 ELMLLGFISL LLTIGQTPIS NICISQNVAS SMHPCSAAQE AEKYGKKDSG KKGGDDDEKP 120
  121 SHRLLLELAE SFIPRRSLAT KGYDKCAEKG KVAFVSAYGI HQLHIFIFVL AVVHVIYCIV 180
  181 TYALGKTKMR RWKQWENETK TIEYQYANDP ERFRFARDTS FGRRHLNFWS KTSITLWTVC 240
  241 FFRQFFGSVT KVDYLALRHG FITAHFAPGS ERSFDFRKYI QRSLEEDFKT VVEISPVIWF 300
  301 VAVLFLLTNT NGLRSYLWLP FIPLVVILIV GTKLQVIITK LGLRIQEKGD VVRGAPVVQP 360
  361 GDDLFWFGRP RFILFLIHLV LFTNAFQLAF FAWSTYEFNL KNCFHESNAD VIIRIVVGVV 420
  421 VQILCSYVTL PLYALVTQMG TKMKPTVFNE RVATALKKWH HTAKKQTKHG RHSESTTPYS 480
  481 SRPTTPTHGS SPIHLLHNFN HRSVESFPNS PSPRYSSHHD DHQFWDPESQ RQEAGSSSHH 540
  541 SLAHESSEKK PVLASVELPP IRTSKSLKDF SFKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.75
Transmembrane Helix	15	37	0.89
Cytoplasmic	38	57	0.74
Transmembrane Helix	58	79	0.67
Non-Cytoplasmic	80	162	0.97
Transmembrane Helix	163	185	0.94
Cytoplasmic	186	289	0.83
Transmembrane Helix	290	308	0.90
Non-Cytoplasmic	309	315	0.80
Transmembrane Helix	316	337	0.91
Cytoplasmic	338	373	0.93
Transmembrane Helix	374	393	0.95
Non-Cytoplasmic	394	411	0.90
Transmembrane Helix	412	435	0.89
Cytoplasmic	436	574	0.95