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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|104487297
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTWGPGMV SVVGPMGLLV VLLVGGCAAE EPPRFIKEPK DQIGVSGGVA SFVCQATGDP  60
   61 KPRVTWNKKG KKVNSQRFET IEFDESAGAV LRIQPLRTPR DENVYECVAQ NSVGEITVHA 120
  121 KLTVLREDQL PSGFPNIDMG PQLKVVERTR TATMLCAASG NPDPEITWFK DFLPVDPSAS 180
  181 NGRIKQLRSG ALQIESSEET DQGKYECVAT NSAGVRYSSP ANLYVRVRRV APRFSILPMS 240
  241 HEIMPGGNVN ITCVAVGSPM PYVKWMQGAE DLTPEDDMPV GRNVLELTDV KDSANYTCVA 300
  301 MSSLGVIEAV AQITVKSLPK APGTPMVTEN TATSITITWD SGNPDPVSYY VIEYKSKSQD 360
  361 GPYQIKEDIT TTRYSIGGLS PNSEYEIWVS AVNSIGQGPP SESVVTRTGE QAPASAPRNV 420
  421 QARMLSATTM IVQWEEPVEP NGLIRGYRVY YTMEPEHPVG NWQKHNVDDS LLTTVGSLLE 480
  481 DETYTVRVLA FTSVGDGPLS DPIQVKTQQG VPGQPMNLRA EARSETSITL SWSPPRQESI 540
  541 IKYELLFREG DHGREVGRTF DPTTSYVVED LKPNTEYAFR LAARSPQGLG AFTPVVRQRT 600
  601 LQSKPSAPPQ DVKCVSVRST AILVSWRPPP PETHNGALVG YSVRYRPLGS EDPEPKEVNG 660
  661 IPPTTTQILL EALEKWTQYR ITTVAHTEVG PGPESSPVVV RTDEDVPSAP PRKVEAEALN 720
  721 ATAIRVLWRS PAPGRQHGQI RGYQVHYVRM EGAEARGPPR IKDVMLADAQ EMVITNLQPE 780
  781 TAYSITVAAY TMKGDGARSK PKVVVTKGAV LGRPTLSVQQ TPEGSLLARW EPPAGTAEDQ 840
  841 VLGYRLQFGR EDSTPLATLE FPPSEDRYTA SGVHKGATYV FRLAARSRGG LGEEAAEVLS 900
  901 IPEDTPRGHP QILEAAGNAS AGTVLLRWLP PVPAERNGAI VKYTVAVREA GALGPARETE 960
  961 LPAAAEPGAE NALTLQGLKP DTAYDLQVRA HTRRGPGPFS PPVRYRTFLR DQVSPKNFKV1020
 1021 KMIMKTSVLL SWEFPDNYNS PTPYKIQYNG LTLDVDGRTT KKLITHLKPH TFYNFVLTNR1080
 1081 GSSLGGLQQT VTAWTAFNLL NGKPSVAPKP DADGFIMVYL PDGQSPVPVQ SYFIVMVPLR1140
 1141 KSRGGQFLTP LGSPEDMDLE ELIQDISRLQ RRSLRHSRQL EVPRPYIAAR FSVLPPTFHP1200
 1201 GDQKQYGGFD NRGLEPGHRY VLFVLAVLQK SEPTFAASPF SDPFQLDNPD PQPIVDGEEG1260
 1261 LIWVIGPVLA VVFIICIVIA ILLYKNKPDS KRKDSEPRTK CLLNNADLAP HHPKDPVEMR1320
 1321 RINFQTPGML SHPPIPIADM AEHTERLKAN DSLKLSQEYE SIDPGQQFTW EHSNLEVNKP1380
 1381 KNRYANVIAY DHSRVILQPI EGIMGSDYIN ANYVDGYRCQ NAYIATQGPL PETFGDFWRM1440
 1441 VWEQRSATIV MMTRLEEKSR IKCDQYWPNR GTETYGFIQV TLLDTIELAT FCVRTFSLHK1500
 1501 NGSSEKREVR QFQFTAWPDH GVPEYPTPFL AFLRRVKTCN PPDAGPIVVH CSAGVGRTGC1560
 1561 FIVIDAMLER IKPEKTVDVY GHVTLMRSQR NYMVQTEDQY SFIHEALLEA VGCGNTEVPA1620
 1621 RSLYAYIQKL AQVEPGEHVT GMELEFKRLA NSKAHTSRFI SANLPCNKFK NRLVNIMPYE1680
 1681 STRVCLQPIR GVEGSDYINA SFIDGYRQQK AYIATQGPLA ETTEDFWRML WENNSTIVVM1740
 1741 LTKLREMGRE KCHQYWPAER SARYQYFVVD PMAEYNMPQY ILREFKVTDA RDGQSRTVRQ1800
 1801 FQFTDWPEQG VPKSGEGFID FIGQVHKTKE QFGQDGPISV HCSAGVGRTG VFITLSIVLE1860
 1861 RMRYEGVVDI FQTVKMLRTQ RPAMVQTEDE YQFCYQAALE YLGSFDHYAT 

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