YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|98660169
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLMSDKFEV VIVGAGVAGS TAAYILASAG LEVLLIERGN YAGSKNMTGG RLYSHSLNKI  60
   61 IPNFAKEAPV ERKITKEKVS LLTEDSAITL DYHSSRLGGN LRDSYSVLRG EFDQWLAQKA 120
  121 EEAGAVLAAG VRVDELLTNN GKVVGVKAGE DEIEADVVVL ADGVNSLLAQ QIGLKKELQP 180
  181 HEVAVGAKEV IELPKQVIED RFNLNEEEGA AWLFAGSCTS GIVGGGFIYT NKSSLSLGIV 240
  241 CTLSDIANSV KSVCQMVEDF KMHPAIKPLI KGGKLLEYSG HLVPEAGYDM VPQLYGDGVV 300
  301 IVGDAAGLVI NVGYTVRGMD LAITSAEAAA KVIIKAREKG DFSKNSLATY KQFLDQSFVI 360
  361 KDMKLYKNFP HFMQNKRIFN DYPKLVDDIL AGMFIVDGST SKPLRKKVMD NLKTVGLMTL 420
  421 LKDSYKGMKA L

Type	Start	End	Confidence
Cytoplasmic	1	9	0.48
Transmembrane Helix	10	28	0.55
Non-Cytoplasmic	29	431	0.85