YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|146274262, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNIVRFLRN VGWRPVASYF LLFLVFFILV QLYSLNSLNI WGAGALAFSC SALLAWIMYS  60
   61 RIIAPLEEVA SVAQDMARGN LDQEIRISSQ DEIGDLARSI NYLARQLKNN IEDVIAEKNR 120
  121 IKAILSSMSD GVIAMDAWGR MILINPVVEE LFRITMAASR GKNILRVIRN YDLEKLLNQA 180
  181 LETGRCMQKQ IQILAPEPRV FQVHVIPLQN SGAERGGVVA LLRDITERKI LQEMRSEFVA 240
  241 NVSHELRTPL TSIRGFAETL LDGALEEPDT ARRFLEIINS ETERLSRLID ELLNLSRLES 300
  301 HKWVPKRQPV NMGELIKRAV AILQPRAVEK NLAIKINLPE DLPVVQGDPD MLSQVLLNLI 360
  361 ENAVVYTQAG GEVSISAAAT QDEMKVDVKD NGIGIPPESL SRVFERFYRV DKARSREQGG 420
  421 TGLGLSIVKH IIDAHRGSVQ VESKVGIGST FSFVIPLEHQ AASEDFS

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	33	0.86
Non-Cytoplasmic	34	39	0.71
Transmembrane Helix	40	59	0.94
Cytoplasmic	60	467	0.73