YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|98661961, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.77
Transmembrane Helix	12	34	0.90
Cytoplasmic	35	41	0.63
Transmembrane Helix	42	62	0.92
Non-Cytoplasmic	63	70	0.60
Transmembrane Helix	71	96	0.83
Cytoplasmic	97	116	0.76
Transmembrane Helix	117	148	0.74
Non-Cytoplasmic	149	154	0.47
Transmembrane Helix	155	187	0.74
Cytoplasmic	188	198	0.48
Transmembrane Helix	199	221	0.82
Non-Cytoplasmic	222	248	0.58
Transmembrane Helix	249	270	0.91
Cytoplasmic	271	293	0.91
Transmembrane Helix	294	313	0.88
Non-Cytoplasmic	314	352	0.92
Transmembrane Helix	353	372	0.94
Cytoplasmic	373	388	0.83
Transmembrane Helix	389	409	0.89
Non-Cytoplasmic	410	418	0.77
Transmembrane Helix	419	442	0.85
Cytoplasmic	443	509	0.75
Transmembrane Helix	510	531	0.88
Non-Cytoplasmic	532	592	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMPWTQAIN PLGNLWLSAL VAAVPVVFLF IALAGLRMKG HIAGLLTVFL AICVAVFAFG  60
   61 MPTKYALLST LYGAMFGLLP IGWIVITAVF LYNMTVKTGQ FEVIKDSIAA ITDDRRLQAL 120
  121 LIAFSFGAFI EGAAGFGTPV AITAAMLVGL GFNPFYAAGI CLIANTAPVA FGGIGIPIIT 180
  181 AGGVSGLDPM AISQMCGRQL PLLSVFVPFW LVLIMSGWNG VKEVMPAVLV SGVSFALVQW 240
  241 FSSNYLSPML PDILSSLASI ICLVIFLRFW KPKEVWRFAD EPPATLKVKH HSAGAILKAW 300
  301 SPFIILTVLI ADWGLQPVKA ILDKATVKLV FSGLDKMILV GDKPMSVVYN FNWLSAGGTS 360
  361 ILLAAIISAF VLKVSPARFL EILWDTLKTL RYALLTIACV LGFAYVSNWS GMTTTLGKAF 420
  421 TITGAAFPFL SAFLGWIGVF ITGSDTSSNA LFCSMQKVTA DSMGINPVLT VATNSSGGVA 480
  481 AKMISPQSIV VGTSSTGLVG REGDLFRFTL PHSLFFTVII ALIALAQAYL FPGIIPGSNS 540
  541 SSVGSIAGNR RRHDHPADYR HFHRYPGRTG IPPGHHCRRG KTKSLKHRGG VI