YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113198396
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.88
Transmembrane Helix	5	25	0.86
Non-Cytoplasmic	26	31	0.82
Transmembrane Helix	32	56	0.85
Cytoplasmic	57	67	0.90
Transmembrane Helix	68	89	0.94
Non-Cytoplasmic	90	411	0.99
Transmembrane Helix	412	431	0.75
Cytoplasmic	432	447	0.70
Transmembrane Helix	448	468	0.72
Non-Cytoplasmic	469	711	0.99
Transmembrane Helix	712	732	0.91
Cytoplasmic	733	743	0.83
Transmembrane Helix	744	766	0.88
Non-Cytoplasmic	767	774	0.86
Transmembrane Helix	775	794	0.88
Cytoplasmic	795	800	0.72
Transmembrane Helix	801	820	0.93
Non-Cytoplasmic	821	842	0.84
Transmembrane Helix	843	866	0.93
Cytoplasmic	867	884	0.94
Transmembrane Helix	885	908	0.86
Non-Cytoplasmic	909	922	0.91
Transmembrane Helix	923	941	0.95
Cytoplasmic	942	947	0.92
Transmembrane Helix	948	968	0.91
Non-Cytoplasmic	969	986	0.81
Transmembrane Helix	987	1005	0.95
Cytoplasmic	1006	1014	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAVILFLI FAISSGVATI IESVYNTQTA WAIVYGAGWF ALVQLLLGAN LAYNIVRYKL  60
   61 LNLKKLPALI FHVSFIFILL GAALTRYIGF EGQMHIRESG ESNEISTSQS YIQLKSFDEG 120
  121 KTYIASEPKY ISSAWGNSFK LSLDVDNKPA ILTYKSFMPN ATSAWVQSDK GEPVLELIFS 180
  181 NDTNSRSVTL KENESIEVGD ISFTFNDTPK QSKFINIVLK DGKFFIKTNQ NIDYMQMSDM 240
  241 SRGSIPKDKI VPFEGLRLYS IDGINFAPKT MLASAIKGVR QVSDNERGSD AIIATLSYNG 300
  301 DSKEISMLNF MPGDTVVVGG KNFEATWSPM MIKLPFSLYL KDFELKRYPG SNSPMSYSSD 360
  361 VIVKDGDLNM DYKIYMNHVL DHSGYRFFQS SYDMDELGTI LSVNKDPGKI PTYIGYFLLG 420
  421 LGLFLNILNP YSRFRKLAKL VNEANIKNAA VFLIACSVIF GVSDLQAYNS LPTISKEHAQ 480
  481 NISTIVVQSA DGRMKPFDTV SHEVLNKLYR SDNYNSMNAN SVFLSMMVNS SYWRNVPIIK 540
  541 ITDKELKKVL EMPINQKYAS FNDFFTKDSS DNMEYKLIKY SELANRKSPG ARNQFDKDVI 600
  601 KADEKLNILY MVFMGELFRV IPKKDDVNNT WFSPAGAIMS FSPSEAREVT TLLQNYFDGV 660
  661 AIAQDSGNWE KADKTLNDIK DYQKKYGAAV MPNQKKIELE LAFNKYKIFQ NLTPVYLLAG 720
  721 FALLIVVFTR MIRPKIKINS VFKIVYIINI LAFAAHTIGL GLRWYIAEHA PWSDSYESMV 780
  781 FIAWSLAFSG MVFARSSAIS LALTSILAGV TLFVAHLSWI DPQITTLVPV LQSYWLTIHV 840
  841 SVITASYGFL GLCSLLGLFT LVLFALQGKK ENSELSRNIL EATRINEMAM ILGLSLLVFG 900
  901 NFLGGVWANE SWGRYWGWDS KETWALVSIL VYAAIVHMRF VPKVNSQYAF AVASMFGYLS 960
  961 IIMTYFGVNF YLSGMHSYAA GDPVPVPNFV WVAFAVMIVI SLLAYRNKKY SKNL