YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|207081874, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKKNRVKPN NYLKNIIKFL LFVGVLVAGL SLAGCHSLRG GGILHPEGTV SFEERQLFFD  60
   61 SLALMLIVVI PVFIMSFTFI VRYRAGHKTS DYKPNWGHSV LLETIWWGVP CGIIIILGIM 120
  121 TWTLTHKLDP YRRIDTPGKP LLIQAVALPW KWLFIYPEQN FATVNYLELP KGRQIEFWLT 180
  181 NDHVPMSAFF IPELGSQIYT MAGMRTRLHL VALKDGNYWG LDTQYNGDGF SDMRFQVKVV 240
  241 EPDELQHWFE KAKQSKEQLT LQLYQKLIQP SAKDPVRYFS SVAPNLFPQI IMKYKQTTGI 300
  301 PTHWAIPQSD

Type	Start	End	Confidence
Cytoplasmic	1	15	0.94
Transmembrane Helix	16	38	0.87
Non-Cytoplasmic	39	60	0.86
Transmembrane Helix	61	83	0.91
Cytoplasmic	84	103	0.87
Transmembrane Helix	104	124	0.94
Non-Cytoplasmic	125	310	0.81