YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94501819, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	192	0.99
Transmembrane Helix	193	214	0.90
Cytoplasmic	215	223	0.74
Transmembrane Helix	224	244	0.91
Non-Cytoplasmic	245	256	0.77
Transmembrane Helix	257	278	0.89
Cytoplasmic	279	289	0.87
Transmembrane Helix	290	310	0.90
Non-Cytoplasmic	311	317	0.65
Transmembrane Helix	318	336	0.94
Cytoplasmic	337	345	0.84
Transmembrane Helix	346	367	0.92
Non-Cytoplasmic	368	375	0.80
Transmembrane Helix	376	394	0.83
Cytoplasmic	395	642	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRKLAHLAV LLPIMLCCSA LAHAETAAAL RLDPNANILA PHIWFIEDAG NDLHIADILE  60
   61 DNQRSTSQLQ WQKNTWPQIN FGFSEKAYWL KTSIINPHPA NEEWVLEIAY PLLDRVEIYA 120
  121 VNEAQQVVGF YHAGDKAIGK EKQIAHPNIA FPVQFPHQEQ YTLYIHVKSE GSTQVPLTIW 180
  181 SWSDFISNSI IHFLFQGFFY GMVLIMALYN FVVWLIVRQR VYLSYVAYIL FLTLFQISLH 240
  241 GLGMLYVWKE YTWLNEYITT ISLILLLASI SFFIRDFFDI KKYSPNLSRL VLCSFYWYLL 300
  301 LSIVFIFIPY SISIRIGAFF AWTQILLIIY ITLYMLNRGH PSSRYFAVAW AVFLIGALLL 360
  361 ALNKFAFLPI TLASEYGLQI GAGLEIMFLS LALADRMANT QREKISAQAR SLDLAHQVTQ 420
  421 EREKLYRAEM ENLKIAREHN EVLEKTVDDR TKELSEALEE LSNAHEKLKN ISVTDALTKI 480
  481 HNRYFFDQHW RSEFKRAHRH KMSIALIILD IDHFKKVNDN FGHPAGDLCL QKVAQSIRIQ 540
  541 ANRESDLVCR LGGEEFAVIL PGTDEMGAYE VAEKIRHTIE KRHISWEGKT IKITVSIGIS 600
  601 AMTPRKSDEK MRNIMFNQAD QALYQAKGNG RNRTVIFESN VT