YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113725939, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	49	0.89
Non-Cytoplasmic	50	59	0.82
Transmembrane Helix	60	82	0.89
Cytoplasmic	83	91	0.86
Transmembrane Helix	92	114	0.83
Non-Cytoplasmic	115	169	0.72
Transmembrane Helix	170	196	0.84
Cytoplasmic	197	235	0.93
Transmembrane Helix	236	258	0.91
Non-Cytoplasmic	259	266	0.84
Transmembrane Helix	267	288	0.93
Cytoplasmic	289	297	0.91
Transmembrane Helix	298	317	0.94
Non-Cytoplasmic	318	323	0.70
Transmembrane Helix	324	345	0.90
Cytoplasmic	346	356	0.81
Transmembrane Helix	357	378	0.90
Non-Cytoplasmic	379	384	0.83
Transmembrane Helix	385	406	0.93
Cytoplasmic	407	551	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINRKRSEV TNRTSPLAPF RHDIFRTIWI ASLASNFGGL IQAVGAAWLM TSISQSVNMV  60
   61 ALVQASTSLP IMLFSLVSGA LADNFDRRRI MLVAQSFMLA VSGLLTVCAY YGIVTPWLLL 120
  121 IFTFLLGCGT ALNNPSWQAS VGDMVPRDDL PAAVALNSMG FNLTRSVGPA IGGAIVAAAG 180
  181 AAAAFAANTL SYFAILFALA RWKPVTPENR LPRETLGRAV SAGLRYVAMS PNIGKVLVRG 240
  241 FAFGLSASAI LALLPLVARD LVGGGPLTYG VMLGAFGLGA IGGALLSARL REFLTSEAIV 300
  301 RYAFAGFAFS ALVTAISSEA WLTCLVLAVS GACWVLALSL FNTTVQLSTP RWVVGRALSL 360
  361 YQTMTFGGIA GGSWLWGVTA EQYGAANALI GSCLLMLVGA AIGLRFALPE FKSLNLDPLN 420
  421 RFNEPLLELD LKPRSGPIVV MIDYDIADND IPEFLKTMAE RRRIRIRDGA GHWALMRDLE 480
  481 NPTTWTETYH VPTWVEYVRH NQRRTQADAA IGDKLTALHR GPNPPRVHRM IERQTIVPDH 540
  541 YERYKRSVEM H