YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113874545, gi...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIKRLLLW VWKVLATPAA TLSLAFLTLG GFVGGVIFWG AFNTALELTN TEEFCVSCHE  60
   61 MRANVYEELT RTVHFSNRSG VRASCPDCHV PHEWTDKIAR KMQASKEVWG KIFGTINTRE 120
  121 KFLNHRLELA KHEWARLKAN DSLECRNCHS SAAMDLSKQT QRAAEIHTRY LLPGRATCID 180
  181 CHKGIAHELP NMQGVEPGWK LPPELEGETL PSASAIDDLR KVMNDSHRVA FGN

Type	Start	End	Confidence
Cytoplasmic	1	19	0.45
Transmembrane Helix	20	41	0.55
Non-Cytoplasmic	42	233	0.99