YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113904572, gi...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.76
Transmembrane Helix	7	24	0.75
Non-Cytoplasmic	25	32	0.68
Transmembrane Helix	33	56	0.86
Cytoplasmic	57	67	0.76
Transmembrane Helix	68	87	0.88
Non-Cytoplasmic	88	91	0.62
Transmembrane Helix	92	113	0.86
Cytoplasmic	114	132	0.88
Transmembrane Helix	133	153	0.92
Non-Cytoplasmic	154	173	0.87
Transmembrane Helix	174	194	0.92
Cytoplasmic	195	228	0.93
Transmembrane Helix	229	253	0.86
Non-Cytoplasmic	254	261	0.91
Transmembrane Helix	262	285	0.91
Cytoplasmic	286	293	0.90
Transmembrane Helix	294	314	0.95
Non-Cytoplasmic	315	320	0.72
Transmembrane Helix	321	342	0.92
Cytoplasmic	343	357	0.81
Transmembrane Helix	358	378	0.89
Non-Cytoplasmic	379	391	0.82
Transmembrane Helix	392	414	0.84
Cytoplasmic	415	705	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGAASFGDW FGLLATSVFA ASQVEGSTAK GAAFGTVIAI RLLPALVLGP IAGVFADRFD  60
   61 RRWTMVICDV LRFLLFASIP LVAVLGASGA VVVGWATIAT FLIESITLLW IPAKEAAVPN 120
  121 LIPRARLEAA NQLTLITTYG LTPVVAATVL AALDGVVRAA TGGAAPDWAE PAQLALWFNA 180
  181 LSRLATAVVV AFGIREISQG PAAQRGQTEQ SMLRQFKDGW RFIGQTPLVR GLVLGIFGAF 240
  241 AGGGIVIGTA RFFANSLGAG DAAFYLLFGA IFIGLSIGIG LGPMIVKEMS RRRWFGMSIV 300
  301 LASAAVMTLA FAIHLSMAMV GAVLVGAGAG MAFLAGTTLL GGEIADEVRG RVFAVVQIGT 360
  361 RLVLILAIAL SSLLAGVGGS RRFEVVNLGI SISSTRLLLL AAGLAGIFAG VSAFRQMDDK 420
  421 KGVPVLADLW GSVRGRPLTP TEPFSSAGLF VVFEGGEGAG KSTQLALLAA RLRDQGRDVV 480
  481 VTREPGATGV GERIRSLLLG QPGSEVPSPR AEALLYAADR AHHVATVVRP ALARGAVVTS 540
  541 DRYVDSSLAY QGVGRTLPVD EVSWLSSWAT GGLKPDLVVL LDIDPNTGLS RVAARGGVSD 600
  601 HLEAESVSFH ERVRYAFLDL AAADPRRYLV LDAARPTDEI ADEVARRVAE LLGAQAGGPN 660
  661 PPAASESTAT APAASRPNPP SASGPDTAVH SELSDPKLVT MERRT