YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|160874684, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKWVKSGSP WIWMTGGAVS ISLIAVLGLL LLIAWRGLSY FWPATVYQWE LEDNTGVRST  60
   61 LIGEVYDREE VPTERLIAAG HVFKEHPGEF VTRYLVKTGN REFVGLDFRW ILGTDILSRS 120
  121 TPSDVAMIER AKNGNFYGYP IAVIENGKRL DLVNDAIESS LMEHIDRAVA LSDKAVDLQK 180
  181 QDIGSINYAI EKLRLQERRY ELDGELTDSN KADLVAKRAQ LQKDYLVLEK ELFALRDDAA 240
  241 RDSVIVRDMR GEEVELKLDT VLDVTYVNHL SLIGKIGKWF VGIGRFVSDD PREANTEGGV 300
  301 FPAIFGTVFM VMLMAVIVTP FGVVAAVYLH EYAKKGPITK MIRIAVINLA GVPSIVYGVF 360
  361 GLGFFVYMMG GSIDQLFYAE ALPSPTFGSP GVIWSALTLA ILTLPVVIVS TEEGLSRIPS 420
  421 AVRQGSLALG ATKAETLWRI VIPMASPAIM TGLILAVARA AGEVAPLMLV GVVKLAPTLP 480
  481 LDFNFPFVHL ERKFMHLGFH IYDVGFQSPN VEAARPLVYA TSFLLVSVIV ALNLTAIGVR 540
  541 NHLREKYRSL EH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	35	0.88
Non-Cytoplasmic	36	302	0.92
Transmembrane Helix	303	329	0.86
Cytoplasmic	330	343	0.93
Transmembrane Helix	344	368	0.89
Non-Cytoplasmic	369	390	0.89
Transmembrane Helix	391	411	0.91
Cytoplasmic	412	436	0.93
Transmembrane Helix	437	461	0.83
Non-Cytoplasmic	462	516	0.91
Transmembrane Helix	517	539	0.90
Cytoplasmic	540	552	0.92