YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113909730, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	43	0.89
Non-Cytoplasmic	44	54	0.63
Transmembrane Helix	55	79	0.81
Cytoplasmic	80	86	0.69
Transmembrane Helix	87	110	0.89
Non-Cytoplasmic	111	139	0.78
Transmembrane Helix	140	160	0.93
Cytoplasmic	161	169	0.71
Transmembrane Helix	170	188	0.83
Non-Cytoplasmic	189	200	0.80
Transmembrane Helix	201	221	0.94
Cytoplasmic	222	233	0.90
Transmembrane Helix	234	257	0.88
Non-Cytoplasmic	258	315	0.83
Transmembrane Helix	316	338	0.83
Cytoplasmic	339	358	0.83
Transmembrane Helix	359	379	0.95
Non-Cytoplasmic	380	414	0.75
Transmembrane Helix	415	435	0.93
Cytoplasmic	436	453	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQWHPSLTL EPPPKTGKKL FGAPPFILSA SFALLILVGT CLLKLPIATV SPITWLQSLF  60
   61 TVTSAVTVTG LVVVDTGSVF TPFGQAIIAL LIQCGGLGLM TFAIVTLIAL GGKIGFLQQT 120
  121 VAKEAFNQTD TSTLVSTAKA VFVFSLLVEA VGMLILSVYW SSELGWQTSL FHGFFYTISA 180
  181 FNNAGFALSP DSLMPYVADP VINLTITGLF IIGGLGFSVW IDLRRNKRWS KLSVYSRMMI 240
  241 TGTIVINAVA VIAIYFIEYN NPNTLAPLSE LGKWLASWFQ AVTPRTAGFN TLAIDQLEDA 300
  301 STLLILVLMF IGGGSLSTAS GIKVVTFMVL ILATYGYLRR DEAIYVFKRE IPKDTVSKAL 360
  361 ALTIISLVVS WLAIFILVLS EKAPLIDIVF EAISALGTVG LSRGLTGNLT TLGQAIIIFM 420
  421 MFMGRLGPLM LAYFLANPRV KKLRYAETKL AIG