YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|160875256, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATTTALGF AALSCQLNVN SEATFVVGED GYIQALPDGH FAAVDGRPDD VAGGKWLMDS  60
   61 VAFAALQANT PHKAGDLVID YEHQTLNKEK NGQPAPAAGW FNIDDVQYRQ GQGLFIKPRF 120
  121 TDNAIAYLTA KEYKYFSLVF GYDTSTGRPQ FIHSAALTNR PGVDGMLPLA SLAALVTLTA 180
  181 NELSVNTPSQ SSQPEELHVN SLLKKILAAL GVEIPDDVTA LTAEQEVAAL SALNTLTTAA 240
  241 NSVDSLKQQL TALSATSPSV DLSQYVPAAT VAALRAQLVA LTAENGVLTV EQTVKAAIDE 300
  301 GKAFECERDY LTKLGQQSMA ALTANLGERV AIAALTAKQT TTVPDPIKDK ETKLAALTAD 360
  361 QIKMADSWGM SHADFAKAIA ADQEQK

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	386	0.99