YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114187560, gi...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREFTLEEIE AHKSKTDLWV AIHGKVYDVT KYTKDHPGGV DVLVDVAGQD ATEAYEDVGH  60
   61 SEDANEILET YLIGTLKGAA AYKAPTAVRV IQESPVQQPP KGSSGAARTL SLAAGSILSL 120
  121 YFASSFIRQH LSYQDVSKNL LQMVQLPSIK LADSVGHGGF VNGVAAATCV CGMLGSVLVS 180
  181 RLSKLTEIES GFTKFPPHIK RKTVYKTNPH LVPGFLQPKD YKTLPLVAKD LLAPNVYRFV 240
  241 FQLPRKSDAI GLPVGQHVAI RATIDGQSVS RSYTPTSNNL DLGRLELVIK CYPDGLLTGK 300
  301 YLAHLKIGDK VEFRGPKGAM RYKKGLCNKV GMIAGGTGIT PMYQLIRAIC EDDSDTTEIY 360
  361 LIYANRSEED ILLREELEAF AVAYPKSFKI WYMLDNPPSN WQYGKGYVTP PVMREHLPPP 420
  421 SPETKIMLCG PPGMVNASKK SLAGLGFQTP GQVSKMTDQI FCF

Type	Start	End	Confidence
Cytoplasmic	1	105	0.80
Transmembrane Helix	106	127	0.66
Non-Cytoplasmic	128	158	0.80
Transmembrane Helix	159	180	0.65
Cytoplasmic	181	463	0.54