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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114188961, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKRRDLVL LGTGAFIAWG LAVSWLPVLR YLGYAVLLGA FLSFSALIGL ILFTTRTPKS  60
   61 LRSPSKLPAV AFLSPHHWQN EVQTSKTRAI YQPSSLYPQS FVVSEGIDEL LSLITRDFVA 120
  121 SWYQRISPSP VFVNEVDRVV RSAVGNLRDR LLSEDLVSLL VSRIFPILTA HIKEFDVAER 180
  181 SVRGRHLTRN VTESEELDLA IAKKYRDGQL HPAAALSFSD QKLVEQEYLR KIAVALLPQL 240
  241 FPENVLNSRI VSVLVKEIVA CAVLFPLLSA LSDPDTWNQL MEAYGRSAIQ DRKTVRKLRA 300
  301 ALDEHASPVP KSKHAQAFPR LGPHDSERAF ERFVRAIRRC NNLSDARRFR ALVASQLKRE 360
  361 TMVEGQDPVY LRRLETGKRV LDQKVAKLST PGNYQTSLTT AATTYFRPTK PPHTHEASLV 420
  421 DVMHDASGLS YFMEFMDRQQ LMSLVQFWIV VDGFRNPLED DFGDETSPSS TAWTTTDRND 480
  481 IALISETYLA KPELKVTDES RRAVKAFLAA GKRATPEQYR KARTVILTTQ SAVLEELQST 540
  541 YYPKFKKSDL YYKYLASDEA SNSGSRSTPG PQPSSPLTDA PERKPLPPLL SRTTSNSGTR 600
  601 PKDLRRAAVS SSDVRAMGKL FDDDESPRRS LDSQRSAPLF DDDYDTDPLA MSTQSLGKDS 660
  661 QNGDSETNQT QVIETMEAAL NDIITNEPKN GKIEDLKNID SPTSRLSSNE RSPRSSVEST 720
  721 RPEHRSEERG KPSIASLGLI DQSSRLGVFS DDLFPDQQRF IEDEYEEPIG AEKDPADEVH 780
  781 EAAPGDLGLT EAIEALTADI DKLASQESVV DTLTRKAELT NNTAELRILR KSKASIQREI 840
  841 HRKEMQRQQY IIQESDNSLY GRSTVRIKSI VVGKEEDGRE FAMYVIEVQR NAGEQMPAAS 900
  901 WAVARRYSEF HELHHKLRLR YPSVRHLEFP RRRMVMKLQK EFLQKRRLAL EAYLQKLLLL 960
  961 PEVCRSRDLR AFLSQRAIIP RDESTGDGET KDLVTRIYNS VADGMDDFLG NFGVLDQLST1020
 1021 AGQSLISAAT SQQASSAPDS GLATEDAVTA AEAEAELNAF EDRELEPFIK PICDLFLEVF1080
 1081 ELNKGNNWLR GRAVVVVLHQ LLGGTIERKV REGARSLVQD ESLLRYLSLA KDTLWPGGVF1140
 1141 RENKIRTASE RLKSRAEASL VLATLVPDLA GNVVGRANAQ GAARRIFATL NNQRLNTHLV1200
 1201 FTILDEIVLV LFGGAEAGRA R

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle